29 primers for bisulfite-converted dna fragment Search Results


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Qiagen epitect bisulfite kit
Epitect Bisulfite Kit, supplied by Qiagen, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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INFINIUM Inc bisulfite-converted dna processed through the infinium ffpe restoration workflow
Bisulfite Converted Dna Processed Through The Infinium Ffpe Restoration Workflow, supplied by INFINIUM Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Bio-Rad probes
Probes, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Zymo Research ez dna methylation kit
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Ez Dna Methylation Kit, supplied by Zymo Research, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/29+primers+for+bisulfite-converted+dna+fragment/EZ+DNA+Methylation+Kit/pmc05997146-138-7-11
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Zymo Research ez 96 dna methylation gold kit
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Ez 96 Dna Methylation Gold Kit, supplied by Zymo Research, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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New England Biolabs bfai
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Bfai, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/29+primers+for+bisulfite-converted+dna+fragment/BfaI/custom%40r0568%4033941775
Average 95 stars, based on 1 article reviews
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97
New England Biolabs msei
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Msei, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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New England Biolabs mspi
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Mspi, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/29+primers+for+bisulfite-converted+dna+fragment/MspI/custom%40r0106%4033941775
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97
New England Biolabs lambda dna
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Lambda Dna, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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96
Zymo Research ez dna methylation-direct kit
Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) <t>DNA</t> hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 <t>DNA</t> <t>methylation</t> values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).
Ez Dna Methylation Direct Kit, supplied by Zymo Research, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) DNA hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 DNA methylation values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).

Journal: Epigenetics

Article Title: Epigenetic loss of putative tumor suppressor SFRP3 correlates with poor prognosis of lung adenocarcinoma patients

doi: 10.1080/15592294.2016.1229730

Figure Lengend Snippet: Reduction of SFRP3 mRNA expression highly correlates with epigenetic inactivation in adenocarcinoma but not in squamous cell carcinoma. (A) and (B) DNA hypermethylation of the SFRP3 promoter analyzed in primary tumor and normal tissue samples based on data of the TCGA Illumina HumanMethylation450 platform. Patient samples are split into adenocarcinoma (dark green, n = 446), squamous cell carcinoma (light green, n = 357), and normal tissue samples (gray, n = 104). The relative SFRP3 DNA methylation values for each CpG are illustrated in red (high methylation), white (mean methylation), and blue (low methylation). SFRP3 hypermethylation is strongly increased in adenocarcinoma and squamous cell carcinoma samples compared to normal lung tissue. Horizontal lines: grouped medians. Boxes: 25–75% quartiles. Vertical lines: range, peak, and minimum, ***P < 0.001. (C) and (D) Correlation analyses demonstrate a highly significant inverse correlation between SFRP3 mRNA expression (TCGA IlluminaHiSeq mRNA expression platform) and DNA hypermethylation (TCGA Illumina HumanMethylation450 platform) in primary adenocarcinoma samples (n = 424; Spearman r = −0.3084; P < 0.0001) but not in squamous cell carcinoma samples (n = 355; Spearman r = −0.0074; P = 0.8887).

Article Snippet: Extracted tissue DNA was bisulfite-converted using the EZ DNA methylation kit (Zymo Research, Orange, CA, USA) as previously described [ 29 ].

Techniques: Expressing, DNA Methylation Assay, Methylation